RnoEX0028558 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:100987833-100995463:-
Coord C1 exon
chr4:100995283-100995463
Coord A exon
chr4:100993623-100993802
Coord C2 exon
chr4:100987833-100988066
Length
180 bp
Sequences
Splice sites
3' ss Seq
GAACTTGTGTGTTTATTCAGATC
3' ss Score
8.07
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CGATGTAGTGCGACTTGAAAAACCTGAGTTGGAGGGACAGAGAGTCCAGCTCATCGTGAGGATCAATAGTGATAAAAACCAGCTGAAGTCCATTGAAGACAAAATCCTGAAATTGCTCTTTACATCTGAAGGGAATATTCTGGATAACGAAGAACTTATTGATACACTCCAGGACTCAAAG
Seq A exon
ATCACTTCAGGTGCCATTAAAACCAGGCTGAAGGAAGCAGAGTCCACCGAGTTGATGATCAACATAGCTCGAGAGAGGTACCGCCCAGTGGCCACACAGGGCTCCGTGATGTACTTTGTGATCGCCAGCCTCTCAGAAATTGATCCCATGTATCAGTATTCACTGAAGTACTTTAAACAG
Seq C2 exon
TTGTTCAACACAACAATCGAAACGTCTGAGAAGAGTGACAGCCTGCAGGAGCGCCTGGCAATCCTCCTGCAGCAGACCCTCCTCACTGCGTACACCAATGTTTCCCGGGGACTCTTCGAGCAGCACAAGCTCATCTACAGCTTCATGCTCTGCGTCGACATCATGCGCCAGCAAGAGCAGCTAACTGAGGCCGAGTGGAATTTCTTCCTCCGAGGTTCTGCAGGGATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'61-65,'61-64,62-65
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(26.0=100)
A:
PF127812=AAA_9=PD(2.6=10.0)
C2:
PF0302810=Dynein_heavy=PU(0.1=1.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCAGCTCATCGTGAGGA
R:
CCCCGGGAAACATTGGTGTAC
Band lengths:
250-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]