DreEX6031359 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21396767-21403438:+
Coord C1 exon
chr1:21396767-21396998
Coord A exon
chr1:21401720-21401872
Coord C2 exon
chr1:21403298-21403438
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTCTGTCTGTTGTAGATT
3' ss Score
12.33
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
AATTGCCCGCATGATTCGCCAAGAGCGTGGCAATGCCCTGTTGGTTGGTGTGGGTGGCACAGGAAAGCAATCTCTGACACGTCTGGCTGCTCACATGTGTGGTTACCGTTGCTTTCAGATTGAGTTGAGCCGTGGTTATAATTACGACAGCTTCCATGAAGACCTGCGTAAACTTTACAGAATGGCAGGTGTGGAAGGCCAGGACATGGTCTTCCTCTTCACGGACACTCAG
Seq A exon
ATTGTGGTGGAAGAATTCCTGGAGGACATTAACAACATGCTGAACTCTGGTGAAGTACCGAACCTCTTTGAGAAGGATGAGTTAAAACAGGTGCTGGCTGCCATTAGCCCCAAGGCCAAAGAAGCTGGCATCTCTGAGGGAAACAGGGATGAG
Seq C2 exon
GTTTACCAGTTCTTTATCACTCGTGTGCGTGAGAAGCTGCACATAGTGTTGTGTATGAGCCCTGTGGGAGACTCCTTCCGCTCACGATGCCGCATGTTCCCATCTCTAGTAAACTGCTGCACCATCGACTGGTTTGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'49-52,'49-51,50-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(28.5=100)
A:
PF127802=AAA_8=FE(18.5=100)
C2:
PF127802=AAA_8=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCACAGGAAAGCAATCT
R:
AGTCTCCCACAGGGCTCATAC
Band lengths:
253-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]