HsaEX6014174 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84921373-84926858:+
Coord C1 exon
chr2:84921373-84921604
Coord A exon
chr2:84924699-84924851
Coord C2 exon
chr2:84926718-84926858
Length
153 bp
Sequences
Splice sites
3' ss Seq
ATCACTGCTTTCTTCTACAGATT
3' ss Score
11.28
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GATTGCTCGGATGATACGTCAAGAAAGAGGCAATGCCCTGCTTGTTGGAGTAGGAGGCACAGGAAAGCAGTCACTCACGAGACTTGCAGCTCATATATGCGGTTACAAATGTTTGCAGATTGAACTCAGCCGGGGATATAATTATGATAGTTTTCATGAAGACCTGAGGAAGTTGTACAAAATGGCTGGTGTAGAAGACAAGAATATGGTTTTCCTTTTCACTGACACCCAG
Seq A exon
ATTGTAGTGGAGGAGTTCCTAGAAGATATAAATAACATCCTGAACTCAGGTGAAGTGCCTAATTTATTTGAAAAGGATGAACTGGAGCAGGTTTTAGCGGCCACCAGACCAAGAGCAAAAGAAGTAGGAATTTCTGAGGGGAACAGAGACGAG
Seq C2 exon
GTGTTTCAATACTTTATCAGCAAAGTGCGTCAGAAGCTGCACATTGTTCTCTGCATGAGCCCAGTTGGGGAGGCCTTTCGGTCCCGATGCAGGATGTTTCCATCCCTTGTGAATTGCTGCACCATTGACTGGTTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'49-49,'49-48,50-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.003 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(28.5=100)
A:
PF127802=AAA_8=FE(18.5=100)
C2:
PF127802=AAA_8=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTTGGAGTAGGAGGCAC
R:
TGCAGAGAACAATGTGCAGCT
Band lengths:
248-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)