MmuEX6004943 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73039577-73045214:-
Coord C1 exon
chr6:73044983-73045214
Coord A exon
chr6:73042035-73042187
Coord C2 exon
chr6:73039577-73039717
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCACTTTGCTTTTCCAATAGATC
3' ss Score
8.71
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
Exon sequences
Seq C1 exon
AATTGCACGGATGATCCGCCAGGAAAGGGGCAACGCGCTGCTGGTTGGTGTAGGAGGCACGGGAAAGCAGTCCCTCACGAGACTTGCAGCTCATATATGTGGTTACAAGTGTATGCAGATCGAACTTAGCCGAGGGTATAATTATGACAATTTCCACGAAGACCTGAGGAAATTGTACAAGATGGCTGGTGTGGAAGACAAAGATATGGTTTTCCTTTTCACAGACACCCAG
Seq A exon
ATCGTCGTCGAAGAGTTCCTTGAAGACATAAACAACATTCTGAATTCTGGTGAAGTGCCTAATTTATTTGAGAAGGACGAGTTGGAGCACGTTTTAGCAGCCACCCGACCAAAAGCAAAGGAAGTTGGAATCTCTGAGGGGAACAGAGATGAG
Seq C2 exon
GTGTTTCAATATTTCATCAGCAGAGTACGACAGAAGCTGCACATAGTTCTCTGCATGAGCCCGGTTGGCGAGGCCTTCAGGTCCCGATGCCGGATGTTTCCCTCCCTGGTAAACTGCTGCACCATTGACTGGTTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'47-47,'47-46,48-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(28.5=100)
A:
PF127802=AAA_8=FE(18.5=100)
C2:
PF127802=AAA_8=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCGAACTTAGCCGAGG
R:
ATGGTGCAGCAGTTTACCAGG
Band lengths:
243-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: