RnoEX0028552 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101018919-101024605:-
Coord C1 exon
chr4:101024374-101024605
Coord A exon
chr4:101021324-101021476
Coord C2 exon
chr4:101018919-101019059
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCACTTTGCTTTTCCTGTAGATC
3' ss Score
9.28
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
Exon sequences
Seq C1 exon
AATCGCACGGATGATCCGCCAGGAAAGGGGCAATGCACTGCTGGTTGGTGTAGGAGGCACGGGAAAGCAGTCCCTCACGAGACTTGCCGCTCATATATGTGGTTACAAGTGTTTGCAGATCGAACTTAGCCGGGGGTATAATTATGACAGTTTCCACGAAGACCTGAGGAAGTTGTACAAGATGGCTGGTGTGGAAGACAAAAACATGGTTTTCCTTTTCACAGACACCCAG
Seq A exon
ATCGTCGTTGAAGAGTTCCTTGAAGACATAAACAACATCCTCAATTCGGGTGAAGTGCCCAATTTATTTGAGAAGGATGAGCTGGAGCAGGTTTTAGCAGCCACCCGACCGAAAGCCAAGGAAGTTGGAATCTCTGAGGGGAACAGAGATGAG
Seq C2 exon
GTGTTTCAATATTTCATCAGCAGAGTACGACAGAAGCTGCACATAGTTCTCTGCATGAGCCCGGTTGGCGAGGCCTTCAGGTCCCGATGCCGGATGTTTCCATCCCTGGTGAACTGCTGCACCATTGACTGGTTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'47-51,'47-50,48-51
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(28.5=100)
A:
PF127802=AAA_8=FE(18.5=100)
C2:
PF127802=AAA_8=FE(17.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAACTTAGCCGGGGGTAT
R:
TCAATGGTGCAGCAGTTCACC
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]