DreEX6031361 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21394572-21396998:+
Coord C1 exon
chr1:21394572-21394621
Coord A exon
chr1:21396449-21396603
Coord C2 exon
chr1:21396767-21396998
Length
155 bp
Sequences
Splice sites
3' ss Seq
ACAATTTAATTCAATTTTAGGTT
3' ss Score
9.07
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
Exon sequences
Seq C1 exon
AGCCAGCATACTTTGTGAATCAGCCCATCATTTTTGGAGATTTCATCAAG
Seq A exon
GTTGGAGCAGACAAGGCTGATCGTGTCTATGAGGATCTAACTGACATGGACAAGATTCGCCAGGTGCTTCAGGACTACCTGGATGACTACAACACAACCTTTGCAAAGGAAACCAAGCTGGTTTTCTTTCAAGATGCCATTGAACACGTGTCTAG
Seq C2 exon
AATTGCCCGCATGATTCGCCAAGAGCGTGGCAATGCCCTGTTGGTTGGTGTGGGTGGCACAGGAAAGCAATCTCTGACACGTCTGGCTGCTCACATGTGTGGTTACCGTTGCTTTCAGATTGAGTTGAGCCGTGGTTATAATTACGACAGCTTCCATGAAGACCTGCGTAAACTTTACAGAATGGCAGGTGTGGAAGGCCAGGACATGGTCTTCCTCTTCACGGACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'47-50,'47-49,48-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127802=AAA_8=PU(8.1=42.3)
C2:
PF127802=AAA_8=FE(28.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCATACTTTGTGAATCAGC
R:
CCTTCCACACCTGCCATTCTG
Band lengths:
247-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]