HsaEX6014176 @ hg38
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein axonemal heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:2951]
Coordinates
chr2:84686484-84694480:+
Coord C1 exon
chr2:84686484-84686557
Coord A exon
chr2:84688439-84688593
Coord C2 exon
chr2:84694249-84694480
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCCCATAAATTATAGTTT
3' ss Score
6.51
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
ACAAACATTTTGGAATTGCAATTGACCTGGAATATTTTTTGAATAAGCCCATCATATTTGGAGATTTCATTAAG
Seq A exon
TTTGGAGCAGATAAAGCTGATCGGATTTATGATGACATGCCTGATATAGAGAAAACTGCAAATGTTCTACAGGACTATCTTGATGATTATAATCTCACAAATCCCAAAGAAGTAAAGTTGGTGTTCTTCCAGGATGCTATAGAACATGTTTCAAG
Seq C2 exon
GATTGCTCGGATGATACGTCAAGAAAGAGGCAATGCCCTGCTTGTTGGAGTAGGAGGCACAGGAAAGCAGTCACTCACGAGACTTGCAGCTCATATATGCGGTTACAAATGTTTGCAGATTGAACTCAGCCGGGGATATAATTATGATAGTTTTCATGAAGACCTGAGGAAGTTGTACAAAATGGCTGGTGTAGAAGACAAGAATATGGTTTTCCTTTTCACTGACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'61-66,'61-65,62-66=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127802=AAA_8=PU(8.1=42.3)
C2:
PF127802=AAA_8=FE(28.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATTGCAATTGACCTGGA
R:
ACCAGCCATTTTGTACAACTTCCT
Band lengths:
254-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains