MmuEX6004942 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73044983-73051924:-
Coord C1 exon
chr6:73051851-73051924
Coord A exon
chr6:73049998-73050152
Coord C2 exon
chr6:73044983-73045214
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCTCACAAATCGCCTTACAGTTT
3' ss Score
6.97
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACAAGCACTTTGGAATTGCAATTGACCTGGAATACTTTTTAAGCAAGCCCATCATATTTGGGGATTTCATTAAG
Seq A exon
TTTGGAGCAGAGAAGTCTGACCGCATCTACGATGATTTACCCGACATGGAGAAAATCGAGAATGTTCTGCAGGACTATCTCGATGACTATAACCTCACAAACCCTAAGGAAGTCAAGCTGGTGTTCTTCCAGGATGCCATAGAGCACGTGTCCAG
Seq C2 exon
AATTGCACGGATGATCCGCCAGGAAAGGGGCAACGCGCTGCTGGTTGGTGTAGGAGGCACGGGAAAGCAGTCCCTCACGAGACTTGCAGCTCATATATGTGGTTACAAGTGTATGCAGATCGAACTTAGCCGAGGGTATAATTATGACAATTTCCACGAAGACCTGAGGAAATTGTACAAGATGGCTGGTGTGGAAGACAAAGATATGGTTTTCCTTTTCACAGACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'45-45,'45-44,46-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127802=AAA_8=PU(8.1=42.3)
C2:
PF127802=AAA_8=FE(28.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATTGCAATTGACCTGGA
R:
CCACACCAGCCATCTTGTACA
Band lengths:
258-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: