RnoEX0028551 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101024374-101030451:-
Coord C1 exon
chr4:101030378-101030451
Coord A exon
chr4:101027926-101028080
Coord C2 exon
chr4:101024374-101024605
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCCCACAAATCACCTTACAGTTT
3' ss Score
5.86
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
ACAAGCACTTTGGGATTGCGATTGACCTGGAATACTTCCTAAGCAAGCCCATCATATTTGGTGATTTCATTAAG
Seq A exon
TTTGGAGCAGATAAGGCTGACCGCATCTACGATGATTTACCTGACATAGAGAAAATCGAGAATGTTCTTCAGGACTATCTCGACGACTATAACCTCACAAACCCCAAGGAAGTGAAGCTGGTGTTCTTCCAGGATGCCATAGAGCACGTGTCAAG
Seq C2 exon
AATCGCACGGATGATCCGCCAGGAAAGGGGCAATGCACTGCTGGTTGGTGTAGGAGGCACGGGAAAGCAGTCCCTCACGAGACTTGCCGCTCATATATGTGGTTACAAGTGTTTGCAGATCGAACTTAGCCGGGGGTATAATTATGACAGTTTCCACGAAGACCTGAGGAAGTTGTACAAGATGGCTGGTGTGGAAGACAAAAACATGGTTTTCCTTTTCACAGACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'45-49,'45-48,46-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127802=AAA_8=PU(8.1=42.3)
C2:
PF127802=AAA_8=FE(28.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCACTTTGGGATTGCGA
R:
ACTTCCTCAGGTCTTCGTGGA
Band lengths:
247-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]