DreEX6031370 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21365813-21373865:+
Coord C1 exon
chr1:21365813-21365920
Coord A exon
chr1:21370840-21371395
Coord C2 exon
chr1:21373743-21373865
Length
556 bp
Sequences
Splice sites
3' ss Seq
AATCCCACTTTTTCCTTTAGTGG
3' ss Score
6.57
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTCATTAAAAAGAGAAAATCCGAACCTGAGTGAGGATGTTGTGCTGATCAGAGCTCTGCGAGACTCAAACCTGCCCAAGTTCCTCAAAGATGATGCTGCGCTTTTCAG
Seq A exon
TGGCATCTTGTCAGATCTCTTCCCTGGCGTCACCATTCCAGAGCATGATTACGGTGTCCTGCAGTCCACCATACACTCATCCCTGTGCCAGCGCTCTCTCCAGCCCCTTCCCAGCATCATTAGCAAGGTTATTCAGCTCTATGAAACCATGCTTGTCCGCCATGGCGTTATGCTTGTGGGACCCACTGGCAGCGGCAAGACCACTGTCTACCGCGTGCTGGCAGACACCTTGGATACCCTTCATCATGCCGGGCACCCAAATCCCTTCTTTCGCCCTGTTAAAACCTATGTGCTCAACCCAAAGTCTGTGAGCATGGGTGAGCTCTATGGTGAGGTGAATCCACTGACGCTGGAGTGGCGGGACGGTCTGATGGCACTTTGTGTTCGGGCCGCAGTTCAAGACTTCAGTGATGACCACAAATGGGTGATCAGCGATGGTCCTGTGGATGCGCTGTGGATTGAGAATATGAACACAGTGCTGGATGATAACAAGATGCTCTGCTTGGCCAACAGTGAAAGGATTAAGCTCACACCTTCCATTCACATGATGTTTGAG
Seq C2 exon
GTTCAAGATCTTGCGGTGGCGTCTCCTGCAACAGTAAGTCGTTGTGGGATGGTGTACATTGACCCAGAGGAGCTTAAGTGGATGCCGTACGTTCAGACGTGGTTAACAGGATTCGCAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(3.0=18.9)
A:
PF077289=AAA_5=PU(89.0=69.9)
C2:
PF077289=AAA_5=PD(9.6=34.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATTAAAAAGAGAAAATCCGAACC
R:
TTCTCTGCGAATCCTGTTAACCA
Band lengths:
230-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]