MmuEX0015006 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73077857-73083639:-
Coord C1 exon
chr6:73083532-73083639
Coord A exon
chr6:73079128-73079683
Coord C2 exon
chr6:73077857-73077979
Length
556 bp
Sequences
Splice sites
3' ss Seq
TGTCGTTTCTGTTTTGTCAGTGG
3' ss Score
5.99
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTCTCTAAAAAGAGAGAACCCAGACCTCAGTGAAGATGTGGTCCTGATCAGAGCGTTGCGAGACTCCAACTTGCCGAAATTCTTAACAGACGATGCTCTCCTGTTCAG
Seq A exon
TGGGATCATATCTGATCTTTTTCCTGGAGTCCAAATCCCAGAACATGACTATGGTATTTTGCAGTCGACAATTGTGGAGGTCATGATTAACCAGAACCTTCAGCCTGAGTTATGTATGGTCAAAAAGGTGATACAGCTGTATGAAACGATGCTGGTGAGACACGGCGTTATGTTAGTAGGGCCAACGGGAGGTGGCAAGACCACAGTTTACCAAGTATTAGCGGAAACCTTAGGGAACCTCGAAAAGCTCAACACAGACAATCCTTTTTATCAGCCGGTAAAAACCTATGTTCTTAACCCCAAATCGATCACAATGGGAGAGTTATATGGGGAAGTCAATAACGTGACCTTGGAATGGAAGGACGGTTTGATGGCACTAAGTGTCCGAGCAGCTGTGAACGATACTTCAGAAGACCATAAATGGATAATCAGCGATGGGCCAGTGGACGCGCTTTGGATTGAAAATATGAATACGGTGTTGGACGACAACAAGATGCTGTGCCTGGCTAACAGCGAAAGGATTAAACTCACACCTCAGATCCACATGCTTTTTGAG
Seq C2 exon
GTACAAGACCTCAGGGTGGCCTCTCCTGCCACGGTCAGCCGATGTGGAATGGTGTTCGTGGACCCCGAAGAACTCAAGTGGATGCCTTATGTTAAAACGTGGATGAGGACCATGTCTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'34-34,'34-33,35-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(3.0=18.9)
A:
PF077289=AAA_5=PU(89.0=69.9)
C2:
PF077289=AAA_5=PD(9.6=34.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAAAAAGAGAGAACCCAGACCTCA
R:
AGACATGGTCCTCATCCACGT
Band lengths:
222-778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: