RnoEX0028548 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101048340-101067315:-
Coord C1 exon
chr4:101067208-101067315
Coord A exon
chr4:101056404-101056959
Coord C2 exon
chr4:101048340-101048462
Length
556 bp
Sequences
Splice sites
3' ss Seq
CGTCATTTCTGTTTTGTCAGCGG
3' ss Score
4.5
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ATCTCTAAAAAGAGAGAACCCAGACCTCAGCGAAGACGTGGTCCTGATAAGAGCGTTGCGAGACTCCAACTTGCCCAAATTCTTAACAGACGATGCTCTCCTGTTCAG
Seq A exon
CGGTATCATATCTGATCTTTTTCCTGGAGTCCAAATCCCAGAACACGACTATGGTATTTTGCATTCAACAATTGTGGATGTCATGATTAGCCAGAACCTTCAGCCTGAGATATGTATGGTCAAAAAGGTGATACAGTTGTACGAAACCATGCTGGTAAGACACGGCGTTATGTTAGTAGGACCAACGGGAGGTGGCAAGACCACAGTTTATCAAGTATTAGCAGAAACCTTGGGGAATCTGGAAAAACTCAACACAGGCAATCCTTTTTATCAGCCAGTAAAAACCTTTGTTCTTAATCCCAAATCAATCACCATGGGAGAATTATATGGGGAAGTCAATAACGTGACCTTGGAATGGAAGGACGGTCTGATGGCACTAAGTGTCCGAGCAGCTGTGAATGACACTTCAGAAGATCATAAGTGGATAATCAGTGACGGGCCAGTGGATGCTCTCTGGATTGAAAATATGAATACTGTGTTGGATGACAACAAGATGCTGTGCCTGGCCAACAGTGAAAGGATCAAGCTCACCCCGCAGGTCCACATGCTTTTTGAG
Seq C2 exon
GTACAAGATCTGAAGGTGGCCTCTCCGGCCACAGTCAGCCGATGTGGAATGGTGTTTGTGGATCCAGAAGAACTCAAGTGGATGCCTTACGTTAAAACATGGATGAGCACCCTCTCTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'33-38,'33-37,34-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(3.0=18.9)
A:
PF077289=AAA_5=PU(89.0=69.9)
C2:
PF077289=AAA_5=PD(9.6=34.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAGAACCCAGACCTCAGC
R:
CTTTTTAGAGAGGGTGCTCATCCA
Band lengths:
222-778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]