HsaEX6014186 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84869071-84881906:+
Coord C1 exon
chr2:84869071-84869178
Coord A exon
chr2:84880443-84880998
Coord C2 exon
chr2:84881784-84881906
Length
556 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTTTGTTTTGACAGTGG
3' ss Score
7.61
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCTTTAAAAAGAGAAAACCCAGACCTAAATGAAGATGTGGTGTTGATAAGAGCTTTACAAGACTCCAATTTGCCAAAATTTCTAACAGATGATGCTCTTCTGTTCAG
Seq A exon
TGGAATCATATCTGACCTTTTTCCTGGAGTCCAAATTCCAGAACATGATTATGGTATTTTACAATCAACAATTGTGGATGTCATGAATAGACAAAATCTTCAGCCTGAGATGTGTATGGTTAGAAAGGTGATACAGTTTTATGAAACTATGCTAGTAAGGCATGGTGTTATGTTAGTCGGGCCAACAGGAGGCGGCAAGACCACAGTTTACCGAATACTAGCAGAAACTTTAGGGAATTTACAAAAACTTGGGATAGAAAATTCCTTTTACCAAGCAGTTAAAACATATGTTCTCAACCCTAAATCAATTACCATGGGTGAATTATATGGAGAGGTTAATAACTTAACCTTGGAATGGAAAGATGGTTTGATGGCACTAAGTGTCCGAGCAGCTGTGAATGATACTTCAGAAGACCATAAATGGATCATCAGTGATGGGCCAGTAGATGCTCTTTGGATTGAAAACATGAATACAGTGCTGGATGATAACAAGATGCTTTGCCTGGCTAACAGTGAGAGGATTAAACTCACACCTCAAATTCACATGCTTTTTGAG
Seq C2 exon
GTGCAAGATCTGCGGGTTGCCTCCCCTGCAACAGTCAGTCGATGTGGAATGGTGTTTGTGGATCCTGAAGAACTGAAATGGATGCCTTATGTTAAAACTTGGATGAAGGGTATTTCTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(3.0=18.9)
A:
PF077289=AAA_5=PU(89.0=69.9)
C2:
PF077289=AAA_5=PD(9.6=34.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGAAAACCCAGACCTAAATGA
R:
TTTTTAGAAATACCCTTCATCCAAGT
Band lengths:
222-778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)