DreEX6031376 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21348934-21354076:+
Coord C1 exon
chr1:21348934-21349044
Coord A exon
chr1:21349994-21350119
Coord C2 exon
chr1:21353885-21354076
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTGGGTGTGTGTTTAAACAGAGA
3' ss Score
5.88
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTGGTGTTGACCATCTCTCAGCTCATGTGGTGCAGGGACATGGACAACTGCCTAGAAGGAGAACATGACCATTTTCAAGCGCTACAAGAATTTGAGATCACTAACTTTGAG
Seq A exon
AGACTGAATGCTCTTGCTGCTTTGGTCCGTGGGAATTTGCCTAGTCTTCATCGGAACATCATCACAGCTCTCATCACCATAGATGTGCATGCCAGAGATATCGTCACAGATCTCGTCAAAGAGCAG
Seq C2 exon
GTGGATTCTAGCGATAATTTCGAGTGGCAGAGGCAGTTGCGATATTATTGGGATGTGGATCTGGATGATTGTGTGGCCCGGATGGCACTTTCTCAATATATTTATGGATATGAATATTTGGGAGCATGTCCCCGTCTAGTAATCACTCCACTGACGGTACACATTCATTTAAATTTTTTTTTCCTTATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127742=AAA_6=PU(11.9=45.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGTGGTGCAGGGACATG
R:
TGTGTACCGTCAGTGGAGTGA
Band lengths:
253-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]