HsaEX0020202 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84848562-84851744:+
Coord C1 exon
chr2:84848562-84848675
Coord A exon
chr2:84851389-84851514
Coord C2 exon
chr2:84851589-84851744
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACAATTTTTTTTATTTGTAGAGA
3' ss Score
7.43
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GTTATCCTGACTGTTTCTCAAATTATGTGGTGCCGTGATTTGACTGAATGTCTGGAAACAGAACACAGTAATCATATACAGGCCCTGAAGAATTTTGAAAAAGTAAATTTTGAG
Seq A exon
AGATTAAATGCCCTAGCTGCAATAGTTCAAGGCAGTCTTCCTAAATTACACAGAAACATCCTAACTGCATTGATTACTATTGATGTGCATGCAAGAGATATAGTCACTGAACTTGTTCAATCCAAG
Seq C2 exon
GTGGAGACAGTTGAATCTTTTGACTGGCAGAGACAACTGCGCTATTACTGGGATATAGACCTGGATAATTGTGTGGCTAGAATGGCGCTCTCTCAGTACACTTATGGCTATGAATATTTGGGTGCATGCCCAAGATTGGTTATTACTCCACTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127742=AAA_6=PU(7.4=32.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCCGTGATTTGACTGA
R:
TGTGAGTGGAGTAATAACCAATCT
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)