MmuEX6004927 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73144660-73149207:-
Coord C1 exon
chr6:73149097-73149207
Coord A exon
chr6:73144901-73145026
Coord C2 exon
chr6:73144660-73144815
Length
126 bp
Sequences
Splice sites
3' ss Seq
CAAAATTCTTTCCTTCGTAGAGA
3' ss Score
7.38
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGATCCTGACCATTTCTCAGATCATGTGGTGCCGGGATTTAACTGAGAGTCTAGAATGTGAAGGTGACAACGTAGACGCCCTGGAAGATTTTGAACAAGTAAATTTTGAG
Seq A exon
AGATTAAATGCCCTGGCCGCAATAGTTCGAGGCAATCTTCCTAAATTACACAGAAACATCATCACTGCATTGATTACCATTGATGTGCACGCAAGAGATATAGTTTCTGAGCTGGTTCAAGCCAAG
Seq C2 exon
GTCGACTCAGCCGACTCCTTCGACTGGCAGCGGCAACTGCGCTATTACTGGGACATGGACCTGGATAACTGCGTGGCTAGAATGGCGTTGTCCCAGTACACCTATGCCTATGAGTACTTGGGAGCGTGCCCGAGGCTGGTCATCACTCCTCTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'29-31,'29-30,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127742=AAA_6=PU(4.9=26.2)
C2:
PF127742=AAA_6=PU(7.4=32.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATGTGGTGCCGGGATTT
R:
AGAGGAGTGATGACCAGCCTC
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types