RnoEX0028546 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101081133-101086399:-
Coord C1 exon
chr4:101086289-101086399
Coord A exon
chr4:101081370-101081495
Coord C2 exon
chr4:101081133-101081288
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGATATTCTTTCATTTGTAGAGA
3' ss Score
8.63
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGATCCTGACCATTTCTCAGATCATGTGGTGCCGGGATTTGACCGAGAGTCTAGAATGTGAAGATAATCATTTGGAAGCCCTGGAAAAATTTGAACAAGTGAATTTTGAG
Seq A exon
AGATTAAATGCCCTGGCCGCAATAGTTCGAGGCAGTCTTCCTAAATTACACAGAAACATCATAACTGCATTGATCACCATTGATGTGCATGCAAGAGATATAGTTTCTGAATTGGTTCAATCCAAG
Seq C2 exon
GTAGACTCAGCGGAGTCCTTTGACTGGCAGCGGCAGCTGCGCTACTACTGGGACGTAGACCTGGATAACTGTGTGGCTAGAATGGCGCTATCTCAGTACACCTATGCCTACGAGTACTTGGGAGCATGCCCGAGACTGGTCATCACTCCGCTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'26-31,'26-30,27-31
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127742=AAA_6=PU(7.4=32.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCATGTGGTGCCGGGATTT
R:
AGCGGAGTGATGACCAGTCTC
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]