DreEX6031393 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21317851-21320837:+
Coord C1 exon
chr1:21317851-21318019
Coord A exon
chr1:21320200-21320307
Coord C2 exon
chr1:21320727-21320837
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATACGTAATATATATTACAGGTG
3' ss Score
6.33
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TTTCATCAGACTTGCAGATTATCTGATTGTGAACACAACCCACATGCTTGTGGTCAACTCGGTCAGTAAGCTACTAAGAGTTTTTCAGGAGCATATCACACACACCCCTTCACCCGCCCTCATTCAGAGCTGGACGGGTAACGAGATCAGCCATGATACTGATATAAAG
Seq A exon
GTGACAGCAGAGCAGAATATCAGTGCTTACCACCAGCCAATGTTCATAACTGAGCTGATGCTGGACACACACTCCTTATCATACCAGCCCTCCAATGAAGACTTCCAG
Seq C2 exon
GAGTGTGTAGCAGAGATTATTGGGCAGTTTGAGAAGACAGTTTTGTCTCTGGATACACTGGTGCAAGACACTTACTTTGATGCTTTTACTCAACCCATTATAAACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAACACAACCCACATGCT
R:
TAATGGGTTGAGTAAAAGCATCAAA
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]