MmuEX6004911 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73188330-73191634:-
Coord C1 exon
chr6:73191466-73191634
Coord A exon
chr6:73190334-73190450
Coord C2 exon
chr6:73188330-73188530
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGCACATGTGGTCCTTCCAGGGG
3' ss Score
7.91
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
Exon sequences
Seq C1 exon
CTTCATCCGTCTGAATGACTACCTAATTCAGAACACCCTGCACGTCCTAACAGTAAACACTGCCAGCTCTCTTCTGAATTTCTTCTCAGATAAACTAAAGCGAACTCCCTCAGCAGACGTCATCCAGAAGTGGATTACTGAAGAGAAGCCGGAAGTCACTGAGAAAAAG
Seq A exon
GGGGCCCCACTGATGGAAAAGCAAGAAGAAGATGAGTCTCTCGTCCCCATGTTCCTCACAGAACTGATTCTGACAGTGCAATCACTACTCTTCGAGCCTTCTTTGGAAGACTTTCTG
Seq C2 exon
GATGGCATTTCTGGGGCAATTAATCACTTTGAAAACACGGTGTTGTCAGTTCCTAATCTGGTGCCTGACTCGTACTTTGACGCTTTCACCAGCCCGTTCATTAACAAGAAGGTTGAGGAAAAGACCTGCGGGCCCGGGCCCAACCTGTCAGCCGTGTTTGAGGATGACAGGAACTTTCTCACCATCATCATGCAAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.179 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGCCAGCTCTCTTCTGA
R:
CGCAGGTCTTTTCCTCAACCT
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types