RnoEX0028565 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101135415-101138411:-
Coord C1 exon
chr4:101138243-101138411
Coord A exon
chr4:101137300-101137416
Coord C2 exon
chr4:101135415-101135615
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTACATGTGGTCCTTCCAGGGG
3' ss Score
8.13
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
Exon sequences
Seq C1 exon
CTTCATCCGTCTGAATGATTACCTAATTCAGAACACCTTGCACGTCTTAACGGTAAATACTGCCAGCTCCCTTCTGAATTACCTCTCGGATAAACTAAAGCGAACTCCCTCAGCAGATGTCATCCAGAAGTGGATTACTGAAGATAAGCCCGAAGTCATCGAGAAAAAG
Seq A exon
GGGGCCCCAATGATGGAAAAGCAGGAGGAAGATGAGTCTCTCATCCCCATGTTCCTCACAGAACTGATTCTGACGGTGCAATCATTACTCTTCGAGCCTTCTTTGGAAGACTTTCTG
Seq C2 exon
GATGGCATTTCTGGGATAATTAACCACTTTGAAAACACGGTGTTGTCAGTTCCTAATCTGGTGCCGGACTCTTACTTTAACGCTTTCACCAGCCCTTTCATTAACAAGAAGGTTGAGGAGAAGACCTGTGGCCCGGGGCCGAGCCTCTCAGCCGTGTTTGAGGATGATCGGAACTTTCTCACCATCATCCAGCAAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGCCAGCTCCCTTCTGAA
R:
GCCACAGGTCTTCTCCTCAAC
Band lengths:
244-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]