HsaEX6014208 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84777013-84785059:+
Coord C1 exon
chr2:84777013-84777181
Coord A exon
chr2:84780042-84780158
Coord C2 exon
chr2:84784859-84785059
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGTACATATATTCATTTCAGGGG
3' ss Score
7.89
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
Exon sequences
Seq C1 exon
CTTTATTCGTCTAAACGACTATCTAATTGAGAACACAATGCACATCTTAACGGTAAATGCTGTTAATTCGCTTTTGAACCATCTCACTGACAAGCTAAAACGAACACCTTCAGCAGATGTCATTCAGAAATGGATTACTGAAGAGAAGCCTGAAGTCCCTGATAAAAAG
Seq A exon
GGGACCCTTATGGTGGAAAAGCAAGAAGAAGATGAATCTCTCATCCCCATGTTTCTCACAGAACTAATGTTGACAGTCCAGTCACTGCTCTTTGAGCCTTCTCTGGAAGACTTTCTG
Seq C2 exon
GATGGTATTTTGGGTGCAGTTAATCACTGTCAAAACACTGTGTTATCAGTTCCTAATCTCGTGCCTGATTCGTATTTTGATGCTTTCACCAGCCCTTATATTAACAACAAACTTGAAGGAAAAACCTGTGGAACTGGGCCAAGTTTAGCAGCAGTATTTGAGGATGATAAGAATTTTCACACAATTATTTCTCAAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTTTTGAACCATCTCACTGA
R:
AAACTTGGCCCAGTTCCACAG
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)