DreEX6034267 @ danRer10
Exon Skipping
Gene
ENSDARG00000104949 | slc27a1b
Description
solute carrier family 27 (fatty acid transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-061013-672]
Coordinates
chr1:57815818-57817711:-
Coord C1 exon
chr1:57817642-57817711
Coord A exon
chr1:57817235-57817326
Coord C2 exon
chr1:57815818-57815927
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTTGTACAGGTA
3' ss Score
9.89
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
ACAGGTTATTTTACATCTACACCTCAGGAACGACGGGTTTACCTAAAGCTGCCATCGTGGTGCACAGCAG
Seq A exon
GTATTACCGTATTGCTGCGTTCAGTTATTACTCCTTCGGTCTGCAGCCGGATGATGTGGTGTACTGCTGTCTGCCGCTCTATCACTCAGCAG
Seq C2 exon
GGAACATCATTGGTGTTGGTCAGTGTTTGCTGCACGGCCTGACGGTGGTCATCCGGAGGAAGTTTTCTGCCAGTCGTTTCTGGGATGACTGTGTGAAATACAACTGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104949-'8-7,'8-5,11-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(5.3=100)
A:
PF0050123=AMP-binding=FE(7.1=100)
C2:
PF0050123=AMP-binding=FE(13.6=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTACACCTCAGGAACGACG
R:
CGTACAGTTGTATTTCACACAGTCA
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]