DreINT0150314 @ danRer10
Intron Retention
Gene
ENSDARG00000104949 | slc27a1b
Description
solute carrier family 27 (fatty acid transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-061013-672]
Coordinates
chr1:57815818-57817326:-
Coord C1 exon
chr1:57817235-57817326
Coord A exon
chr1:57815928-57817234
Coord C2 exon
chr1:57815818-57815927
Length
1307 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
TGTGTGTGTGTGTTTGTCAGGGA
3' ss Score
9.17
Exon sequences
Seq C1 exon
GTATTACCGTATTGCTGCGTTCAGTTATTACTCCTTCGGTCTGCAGCCGGATGATGTGGTGTACTGCTGTCTGCCGCTCTATCACTCAGCAG
Seq A exon
GTCTGTGTACACACACACACACACACACACACACATACAGAATAACACAGACAGACAGACTCACACATACTCACACACACACACACATGTACGCACACAGCCAGACACACACACACATACACACACAGACAGAGAGACAGACTCACACATACACACACACACACACGCGCACACACAGACAGACACACACACACAGAATAACACAGACAGACTCACACATACACACACACACACACACATTTACGCACACACAGACAGACACACACACACACACACACACACACACACACACAGAATAACACAAAATAATACTGACAGACTCACACATACACAAACACACACTCACACACATGTACGCACACACAGAATAACACAGACAGACTCACACATACAAACACACACACACACATGTACGCACACACAGAATAACACAGACAGACTCACACATACACACACACACACACACATGTACGCACACACAGAATAACACAAAATAATACTGACAGACTCACACATACACAAACACACACACACACACATGTACGCACACACAGAATAACACAGACAGACTCACACATACACACACACACATGTACGCACACACAGAATAACACAGACAGACTCACACATATACACACACACACACATGTACGCACACACAGATAGACACAAACACACACTTTCACCTTTAGTTACTTCTTTATAAGAGTCTTAAAAAATGTAATATATGAATTTAATTAGTATACTAAAGTCATTTCCCCAACACTGCCTATTGATCTCCAGGTCAGTGTGTCCTGCTGAATACCTTCATTCCAGTGATGTCGACCCTGTTGAGTAATCCTCCTATATTGGGTTTATTTGGCTTTGGCAATATCTGATAACGCTGCAATAGTTCACCGTGTGTCCGCTCTACATCTACAAACATTGTGTTCTCGTTTTGAGTAAATATTTTGTCAGATAAGGAGGTCAGGCTTTACAGTACAGATTCATTAGCTAATTTCACGGCAATTCAAAGCTTAAAGCTGCGTACATTCTAATGTTTTGTCTTTATTAAGCTTGGAGGAAACAGCTGTGGTGTGAGAAATGCGAAAACTGTAAAGAAACTCCTAAAATTGGTCTAGCGGTGCCGAATACTGCTGTTATTGTCAGATAAACGCACAGCTGAAGTAGTTCCGGCAGGTTTTGAGTGCATCACAGCTCTGCATCACTCTGCTGATGGTGTCTGATCTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTCAG
Seq C2 exon
GGAACATCATTGGTGTTGGTCAGTGTTTGCTGCACGGCCTGACGGTGGTCATCCGGAGGAAGTTTTCTGCCAGTCGTTTCTGGGATGACTGTGTGAAATACAACTGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104949:ENSDART00000159070:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.1=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(13.6=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGTATTGCTGCGTTCAGT
R:
CGTACAGTTGTATTTCACACAGTCA
Band lengths:
198-1505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]