DreEX6034602 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:609131-609725:-
Coord C1 exon
chr9:609623-609725
Coord A exon
chr9:609363-609427
Coord C2 exon
chr9:609131-609224
Length
65 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTGGTCACTCACAGGAG
3' ss Score
7.93
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TATAAGACCGGTAAGGAGGGCAGCACTATGGGGGTCACGGTGTCTCACTCCGCCATGTTGGCTCACTGTCATGCGCTCACACAGGCCTGCGGATACACAGAGG
Seq A exon
GAGAGGTTATAACTAATGTGTTGGACTTCAAGCGGGACGCTGGTTTATGGCACGGGGTCTTGACG
Seq C2 exon
AGTGTGATGAACAGAATGCATGTGATCAGCATCCCGTACTCACTGATGAAGGTCAACCCTCTGTCCTGGATACAGAAAGTGCACACTTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058-'17-19,'17-17,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.1=100)
A:
PF0050123=AMP-binding=FE(4.4=100)
C2:
PF0050123=AMP-binding=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGACCGGTAAGGAGGGCAG
R:
ATCCAGGACAGAGGGTTGACC
Band lengths:
172-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]