MmuEX0014699 @ mm9
Exon Skipping
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75758812-75760602:-
Coord C1 exon
chr10:75760500-75760602
Coord A exon
chr10:75759098-75759162
Coord C2 exon
chr10:75758812-75758905
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGTGTCCGCTTTCAGCTG
3' ss Score
11.63
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TATAAAACCAGCAAAGAAGGCAGCACAGTAGGGGTCACCGTATCCCACTCATCCCTGCTGGCGCAGTGCCAGGCCCTGACCCAGGCGTGCGGGTACACGGAAG
Seq A exon
CTGAAACGTTAACGAATGTGCTGGACTTCAAAAGGGATGCTGGTTTGTGGCACGGAGTCTTAACA
Seq C2 exon
AGTGTCATGAATAGGATGCATGTCATCACCATCCCATATGCCCTCATGAAGGTCAACCCACTCTCCTGGATTCAGAAAGTGTGTTCCTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.1=100)
A:
PF0050123=AMP-binding=FE(4.4=100)
C2:
PF0050123=AMP-binding=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCAGCAAAGAAGGCAGCA
R:
ATCCAGGAGAGTGGGTTGACC
Band lengths:
170-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: