HsaEX0019723 @ hg38
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46534585-46537539:+
Coord C1 exon
chr21:46534585-46534687
Coord A exon
chr21:46537224-46537288
Coord C2 exon
chr21:46537446-46537539
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTTGTCCACTTGCAGCTG
3' ss Score
11.32
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TATAAAACCAGCAAAGAAGGCAGTACGGTGGGGGTCACAGTGTCCCACGCATCCCTGCTGGCACAGTGCCGGGCTCTGACCCAGGCGTGCGGGTACTCAGAAG
Seq A exon
CTGAAACATTAACAAACGTGCTGGATTTCAAAAGGGATGCTGGTCTGTGGCATGGCGTGTTAACA
Seq C2 exon
AGCGTCATGAACAGGATGCACGTGGTCAGCGTCCCCTACGCGCTGATGAAGGCGAACCCACTCTCCTGGATCCAGAAAGTGTGCTTCTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-'31-37,'31-36,35-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.1=100)
A:
PF0050123=AMP-binding=FE(4.4=100)
C2:
PF0050123=AMP-binding=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAGAAGGCAGTACGGTG
R:
CTGGATCCAGGAGAGTGGGTT
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development