HsaEX0019723 @ hg19
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47954498-47957452:+
Coord C1 exon
chr21:47954498-47954600
Coord A exon
chr21:47957137-47957201
Coord C2 exon
chr21:47957359-47957452
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCTTCTTTGTCCACTTGCAGCTG
3' ss Score
11.32
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TATAAAACCAGCAAAGAAGGCAGTACGGTGGGGGTCACAGTGTCCCACGCATCCCTGCTGGCACAGTGCCGGGCTCTGACCCAGGCGTGCGGGTACTCAGAAG
Seq A exon
CTGAAACATTAACAAACGTGCTGGATTTCAAAAGGGATGCTGGTCTGTGGCATGGCGTGTTAACA
Seq C2 exon
AGCGTCATGAACAGGATGCACGTGGTCAGCGTCCCCTACGCGCTGATGAAGGCGAACCCACTCTCCTGGATCCAGAAAGTGTGCTTCTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-'16-20,'16-19,17-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(7.1=100)
A:
PF0050123=AMP-binding=FE(4.4=100)
C2:
PF0050123=AMP-binding=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAGAAGGCAGTACGGTG
R:
CTGGATCCAGGAGAGTGGGTT
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)