DreEX6034772 @ danRer10
Exon Skipping
Gene
ENSDARG00000079872 | rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
Coordinates
chr9:2967597-2972042:-
Coord C1 exon
chr9:2971958-2972042
Coord A exon
chr9:2969695-2969755
Coord C2 exon
chr9:2967597-2967673
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTGTTTTGTCCTCAGGTG
3' ss Score
12.27
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
ACCCGGCCAGAGGACGGTCGATGACCTGGAGATCATTTATGAGGAGCTGCTGCACATTAAAGCCTTGTCCCATCTCTCCACCACT
Seq A exon
GTGAAGAGGGAACTCGCTGGTGTTTTAATATTTGAGTCGCATGCGAAAGCAGGCACAGTGT
Seq C2 exon
TGTTCAATCAGGGTGAAGAAGGGACGTCCTGGTACATCATCCTGAAGGGCTCCGTCAATGTGGTCATCTATGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079872-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0002724=cNMP_binding=PU(10.3=42.9)
C2:
PF0002724=cNMP_binding=FE(28.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAGGACGGTCGATGA
R:
ATTGACGGAGCCCTTCAGGAT
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]