RnoEX0074040 @ rn6
Exon Skipping
Gene
ENSRNOG00000001516 | Rapgef4
Description
Rap guanine nucleotide exchange factor 4 [Source:RGD Symbol;Acc:621886]
Coordinates
chr3:58864012-58866389:+
Coord C1 exon
chr3:58864012-58864096
Coord A exon
chr3:58864575-58864635
Coord C2 exon
chr3:58866313-58866389
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCTTTTTTTCTAGGTG
3' ss Score
14.18
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
ACCTGGCCAGAGGACTGCAGATGACCTAGAGATTATCTACGACGAACTCCTTCATATTAAAGCCTTATCCCATCTTTCTACCACA
Seq A exon
GTGAAACGGGAGTTAGCAGGTGTTCTCATTTTTGAGTCTCACGCCAAAGGAGGAACTGTGT
Seq C2 exon
TGTTTAACCAGGGGGAAGAAGGTACCTCCTGGTACATCATTCTGAAAGGATCCGTGAATGTAGTCATTTATGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001516-'39-25,'39-24,40-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0002724=cNMP_binding=PU(10.3=42.9)
C2:
PF0002724=cNMP_binding=FE(28.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGACTGCAGATGACCT
R:
TCACGGATCCTTTCAGAATGATGT
Band lengths:
136-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]