DreEX6034861 @ danRer10
Exon Skipping
Gene
ENSDARG00000006892 | myo3b
Description
myosin IIIB [Source:ZFIN;Acc:ZDB-GENE-070706-2]
Coordinates
chr9:3823988-3828156:-
Coord C1 exon
chr9:3828003-3828156
Coord A exon
chr9:3825640-3825728
Coord C2 exon
chr9:3823988-3824117
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTCTTTATTTTGTTGTGAAGATA
3' ss Score
4.86
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
ATAGAGTATCAGAGTGAGGGTGTAGATGTCAGTCTGGTGGAATACGAGGACAACAGGCCCATTCTGGACATGTTTCTTCAGAAGCCCATGGGTTTACTGTCTTTACTGGATGAGGAGAGCCGATTCCCACAGGCCACTGACCAAACTCTTGTCG
Seq A exon
ATAAATTTCAGGATAACCTGAGGAATAAGTACTTCTGGATACCCAAGCGTGTGGAGCTCTGTTTTGGGATCCAGCATTATGCAGGCCAG
Seq C2 exon
GTCTTGTATAACGTGAGTGGATTTCTGGAGAAGAATCGTGACACTCTTCCTGCAGACATCGTGGTGGTTTTGAGGACATCGGAGAACAGACTTCTGCAGCAGCTGTTTTCCAGCCCTCTGACAAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006892-'20-20,'20-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(4.1=100)
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACAACAGGCCCATTCTG
R:
AAACCACCACGATGTCTGCAG
Band lengths:
179-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]