RnoEX6017339 @ rn6
Exon Skipping
Gene
ENSRNOG00000030022 | Myo3b
Description
myosin IIIB [Source:RGD Symbol;Acc:1560313]
Coordinates
chr3:56529848-56534612:+
Coord C1 exon
chr3:56529848-56530001
Coord A exon
chr3:56532734-56532822
Coord C2 exon
chr3:56534483-56534612
Length
89 bp
Sequences
Splice sites
3' ss Seq
AGTCTCTTTTCTACACACAGATA
3' ss Score
6.78
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATGGAGTATAAAAAGGAAGGCGTCGATGCTGTCCTCGTGCAGTACGAAGACAATCGCCCACTCCTGGACATGTTCCTGCAAAAACCCTTGGGCCTTCTAGCACTTTTGGATGAGGAAAGTCGATTTCCCCAAGGAACAGACCAGACTTTGGTTG
Seq A exon
ATAAATTTGAAGACAACCTACGATGCAAGTTCTTCTGGAGGCCCAAAGGAGTGGAACTCTCTTTCGGCATTCAGCACTATGCTGGACCG
Seq C2 exon
GTGCTGTACGATGCTTCTGGGGTTCTTGAGAAAAACAGAGACACCCTCCCTGCTGATGTGGTGGTAGTCCTGAGGACATCTGAGAACAAGCTCCTTCAGCAACTGTTCTCAATTCCTTTGACCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030022-'25-25,'25-23,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(4.1=100)
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACAATCGCCCACTCCTG
R:
AGGACTACCACCACATCAGCA
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]