MmuEX0030512 @ mm9
Exon Skipping
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70093304-70096149:+
Coord C1 exon
chr2:70093304-70093457
Coord A exon
chr2:70094546-70094634
Coord C2 exon
chr2:70096020-70096149
Length
89 bp
Sequences
Splice sites
3' ss Seq
AGTCTCTTCTCTGCACACAGATA
3' ss Score
7.35
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATGGAGTACAAGAATGAAGGTGTCGATGCTGTCCTCGTGCAGTATGAAGACAATCGCCCACTCCTGGACATGTTCCTCCAAAAACCCTTGGGCCTTCTGGCACTTCTGGATGAAGAAAGTCGATTTCCCCAAGGGACAGACCAGACCTTGGTTG
Seq A exon
ATAAATTTGAAGACAACCTACGGTGTAAGTTCTTCTGGAGGCCCAAAGGTGTGGAACTCTGTTTTGGCATTCAGCACTATGCTGGACCG
Seq C2 exon
GTGTTATACGATGCTTCTGGGGTTCTTGAGAAAAACAGAGACACCCTCCCTGCTGACGTGGTGGTAGTCCTGAGGACGTCTGAGAACAAACTCCTTCAGCAACTGTTCTCAATTCCTTTGACCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-'23-24,'23-23,24-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(4.1=100)
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACAATCGCCCACTCCTG
R:
TCAGGACTACCACCACGTCAG
Band lengths:
182-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: