GgaEX6042369 @ galGal4
Exon Skipping
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17858690-17862491:-
Coord C1 exon
chr7:17862338-17862491
Coord A exon
chr7:17860355-17860443
Coord C2 exon
chr7:17858690-17858819
Length
89 bp
Sequences
Splice sites
3' ss Seq
TTCACTTCTCAAATGTTTAGATA
3' ss Score
6.13
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGGAATATCAAAACGAGGGAATTGATGCTGCTACAGTGGAGTATGAGGACAACCGTCCACTTCTAGATATGTTCCTACAGAAACCCATGGGTCTCCTTTCTCTACTAGATGAAGAAAGTCGATTTCCTCAGGCAACAGACCTAACGTTAGTTG
Seq A exon
ATAAATTTGAAGATAACTTACGATGCAAATACTTCTGGAGACCGAAAGGAGTGGAATTGTCATTTGGTATTCAGCACTATGCTGGAAAG
Seq C2 exon
GTATTATATGATGCCTCCGCATTTCTTGAGAAGAATAGAGACACTCTTCCTGCTGACATAGTGGTGGTGTTGAGAACCTCAGAGAACAAACTTCTTCAGCAGCTGTTTTCTAGCCCGTTAACCAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602-'36-33,'36-32,37-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(4.1=100)
C2:
PF0006316=Myosin_head=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGAGGGAATTGATGCTGCT
R:
TCTTCTCAAGAAATGCGGAGGC
Band lengths:
176-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]