DreEX6034968 @ danRer10
Exon Skipping
Gene
ENSDARG00000061717 | CABZ01075242.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4K6]
Coordinates
chr9:5323190-5325587:+
Coord C1 exon
chr9:5323190-5323244
Coord A exon
chr9:5324480-5324582
Coord C2 exon
chr9:5325494-5325587
Length
103 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGACTTTCTGTGCAGACA
3' ss Score
8.36
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
AACAATGGTTGTACTGGAGAAACAAGACAATGAAGTGTTTGGATTCGAAGTTCAA
Seq A exon
ACATATGGTTTGAAGGTGAAAAACACCAGTATGGTAGAGATGTGCACTTTCGTGTGCAGGGTCCAGGATGGCAGTGCAGCGGAAACTGCAGGTTTAACTGCTG
Seq C2 exon
GTGACATCATATTGTCAGTAAATGGTGTGAGCATTGAGGGTTCCACACACCAGAACATTATCGAGTTGATTCGAGAATCCTCTAACACGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061717-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(18.4=84.2)
A:
PF0059519=PDZ=FE(39.1=100)
C2:
PF0059519=PDZ=FE(35.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGGTTGTACTGGAGAAACA
R:
CAGCGTGTTAGAGGATTCTCGA
Band lengths:
146-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]