RnoEX0026082 @ rn6
Exon Skipping
Gene
ENSRNOG00000004772 | Cytip
Description
cytohesin 1 interacting protein [Source:RGD Symbol;Acc:1307990]
Coordinates
chr3:44166020-44169282:-
Coord C1 exon
chr3:44169228-44169282
Coord A exon
chr3:44166315-44166417
Coord C2 exon
chr3:44166020-44166113
Length
103 bp
Sequences
Splice sites
3' ss Seq
TATCCACTTATACTTTATAGACC
3' ss Score
6.55
5' ss Seq
TTGGTAATG
5' ss Score
4.83
Exon sequences
Seq C1 exon
GAAGGTTGTTACTGTGGAAAAGCAGGACAATGGAACCTTTGGATTTGAAATTCAG
Seq A exon
ACCTACAGACTTCAGAACCAGAACATCTGCTCTTCAGAAGTGTGCACTATGATCTGCAAAGTGCAGGAAGACAGCCCCGCTCACTGTGCTGGCCTGCAAGTTG
Seq C2 exon
GTGACATCTTTGCAAATGTCAATGGCGTGAGCACAGAAGGCTTCACTCACAAACAAGTGGTTGACCTGATCCGATCTTCGGGAAATCTGCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004772-'7-6,'7-5,11-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(18.4=84.2)
A:
PF0059519=PDZ=FE(39.1=100)
C2:
PF0059519=PDZ=FE(35.6=100)
Main Skipping Isoform:
ENSRNOT00000006387fB3844
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGTTACTGTGGAAAAGCAGG
R:
GTTAGCAGATTTCCCGAAGATCG
Band lengths:
146-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]