MmuEX6101406 @ mm9
Exon Skipping
Gene
ENSMUSG00000026832 | Cytip
Description
cytohesin 1 interacting protein [Source:MGI Symbol;Acc:MGI:2183535]
Coordinates
chr2:58000286-58003579:-
Coord C1 exon
chr2:58003525-58003579
Coord A exon
chr2:58000577-58000679
Coord C2 exon
chr2:58000286-58000379
Length
103 bp
Sequences
Splice sites
3' ss Seq
TATCCACTTATATTTTATAGACC
3' ss Score
7.53
5' ss Seq
TTGGTAATG
5' ss Score
4.83
Exon sequences
Seq C1 exon
GAAGGTTGTTACTGTGGAAAAGCAGGACAATGGAACATTTGGATTTGAAATTCAG
Seq A exon
ACCTACAGACTCCAGAACCAGAACATCTGTTCCTCAGAAGTGTGCACTATGATCTGCAAAGTGCAGGAAGACAGCCCCGCTCACTGTGCTGGCCTGCAAGTTG
Seq C2 exon
GTGACATCTTTGCAAATGTCAATGGTGTGAGCACAGAAGGCTTTACTCACAAACAAGTGGTTGACCTGATCCGATCATCAGGAAATCTGCTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026832-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(18.4=84.2)
A:
PF0059519=PDZ=FE(39.1=100),PF081196=Toxin_31=WD(100=88.6)
C2:
PF0059519=PDZ=FE(35.6=100),PF081196=Toxin_31=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTTGTTACTGTGGAAAAGCA
R:
AGCAGATTTCCTGATGATCGGA
Band lengths:
146-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: