GgaEX0018955 @ galGal3
Exon Skipping
Gene
ENSGALG00000012545 | CYTIP
Description
NA
Coordinates
chr7:37856043-37858495:-
Coord C1 exon
chr7:37858441-37858495
Coord A exon
chr7:37856268-37856370
Coord C2 exon
chr7:37856043-37856136
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTGCTGTTTACAGACT
3' ss Score
9.33
5' ss Seq
TTGGTAATG
5' ss Score
4.83
Exon sequences
Seq C1 exon
ACACTTCATTTCTATATTCAAAGAAGATAAAGAGACATTTGGGTTTGAAATCCAG
Seq A exon
ACTATTAGATTTCCAAACCAAACCGATTACTCCTTGGAGGCATGCACTTGTGTCTGCAAAATTCAGGAGGAAAGTCCTGCCCACTTTTCTGGCCTTCAGATTG
Seq C2 exon
GTGATATTCTTGCCAATGTCAATGGAGTGAACACTGATGGTTTTAGTCACAAGCAGATTGTAGACTTGATAAAGTCTTCAGGGAACTATTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012545-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(17.4=78.9)
A:
PF0059519=PDZ=FE(39.5=100)
C2:
PF0059519=PDZ=FE(36.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGAAGATAAAGAGACATTTGGGT
R:
AGTTCCCTGAAGACTTTATCAAGT
Band lengths:
124-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]