DreEX0035953 @ danRer10
Exon Skipping
Gene
ENSDARG00000000588 | grasp
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:ZFIN;Acc:ZDB-GENE-060312-30]
Coordinates
chr23:32280126-32300264:-
Coord C1 exon
chr23:32300210-32300264
Coord A exon
chr23:32289401-32289503
Coord C2 exon
chr23:32280126-32280219
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTATTATTGTGTGTCAACAGACA
3' ss Score
9.07
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAAAACTGTGATCCTGGAGAAGAAAGAAGAGGAGTCCTTTGGCTTCGAGATCCAG
Seq A exon
ACATACGGGCTTCATCACCAAAGTGAGAACTCCGTGGAGATGTGCACCTTTGTTTGCAAAGTCCACGAAGACAGTCCCGCTCTACTCGCAGGCCTTAAAGTTG
Seq C2 exon
GTGACACGATTGCCAGCGTGAACGACACTTCAGTTGACGGATTTCGCCATAAAGAAATCGTCCAGCTCATTAAATCATCAGGAAACAACATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000588-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149212=Gemini_C4=PD(2.9=50.0)
A:
PF0059519=PDZ=FE(39.1=100)
C2:
PF0059519=PDZ=FE(35.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACTGTGATCCTGGAGAAGA
R:
TCCTGATGATTTAATGAGCTGGACG
Band lengths:
138-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]