HsaEX0028545 @ hg38
Exon Skipping
Gene
ENSG00000161835 | GRASP
Description
general receptor for phosphoinositides 1 associated scaffold protein [Source:HGNC Symbol;Acc:HGNC:18707]
Coordinates
chr12:52010881-52013780:+
Coord C1 exon
chr12:52010881-52010935
Coord A exon
chr12:52011039-52011141
Coord C2 exon
chr12:52013687-52013780
Length
103 bp
Sequences
Splice sites
3' ss Seq
GGTCCCCTTGTCCATTACAGACT
3' ss Score
7.6
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GAAAGTGCTGACGTTGGAGAAGGAGGATAACCAGACCTTCGGCTTTGAGATCCAG
Seq A exon
ACTTATGGCCTTCACCACCGGGAGGAGCAGCGTGTGGAAATGGTGACCTTTGTCTGCCGAGTTCATGAGTCTAGCCCTGCCCAGCTGGCTGGGCTCACACCAG
Seq C2 exon
GGGACACCATCGCCAGCGTCAATGGCCTGAATGTGGAAGGCATCCGGCATCGAGAGATTGTGGACATCATTAAGGCGTCAGGCAATGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161835-'6-15,'6-9,7-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.526 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(18.4=84.2)
A:
PF0059519=PDZ=PU(36.8=95.5)
C2:
PF0059519=PDZ=FE(35.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTGACGTTGGAGAAGGA
R:
CTGAGAACATTGCCTGACGCC
Band lengths:
146-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development