RnoEX0039789 @ rn6
Exon Skipping
Gene
ENSRNOG00000007346 | Grasp
Description
general receptor for phosphoinositides 1 associated scaffold protein [Source:RGD Symbol;Acc:70554]
Coordinates
chr7:142874091-142875804:+
Coord C1 exon
chr7:142874091-142874145
Coord A exon
chr7:142874246-142874348
Coord C2 exon
chr7:142875711-142875804
Length
103 bp
Sequences
Splice sites
3' ss Seq
ATCCGGGCATTTGTTCACAGACT
3' ss Score
5.62
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAAGGTTCTGACTTTGGAGAAGGGAGACAACCAGACCTTTGGCTTCGAGATCCAG
Seq A exon
ACTTATGGCCTTCACCACCGAGAAGAGCAGCGTGTGGAGATGGTGACCTTTGTCTGCCGAGTTCACGAGTCCAGCCCTGCCCAGCTGGCTGGGCTCACGCCTG
Seq C2 exon
GGGACACCATCGCCAGTGTCAATGGTCTCAACGTGGAAGGCATCCGGCACCGGGAGATTGTGGATATCATCAAAGCATCTGGCAACGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007346-'4-4,'4-3,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.086 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(18.4=84.2)
A:
PF0059519=PDZ=FE(39.1=100)
C2:
PF0059519=PDZ=FE(35.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCTGACTTTGGAGAAGGGA
R:
CTGAGAACGTTGCCAGATGCT
Band lengths:
147-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]