BtaEX6020594 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021658 | GRASP
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:HGNC:18707]
Coordinates
chr5:28022285-28023770:-
Coord C1 exon
chr5:28023716-28023770
Coord A exon
chr5:28023507-28023609
Coord C2 exon
chr5:28022285-28022378
Length
103 bp
Sequences
Splice sites
3' ss Seq
GGTCCCCTTGCCTGTTACAGACG
3' ss Score
7.3
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GAAAGTGCTGACTTTGGAGAAGGAGGAGAACCAGACCTTTGGCTTTGAGATCCAG
Seq A exon
ACGTATGGCCTTCACCATCGAGAGGAGCAGCGTGTGGAGATGGTGACCTTTGTCTGCCGGGTTCATGAGTCCAGCCCTGCCCAGCTGGCAGGGCTCACACCAG
Seq C2 exon
GGGATACCATTGCCAGCGTCAACGGCCTGAATGTGGAAGGCATCCGACATCGGGAGATTGTCGACATCATTAAGGCATCTGGCAACGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021658-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.086 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(18.4=84.2)
A:
PF0059519=PDZ=FE(39.1=100)
C2:
PF0059519=PDZ=FE(35.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTGACTTTGGAGAAGGAG
R:
CTGAGAACGTTGCCAGATGCC
Band lengths:
146-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]