MmuEX6056606 @ mm10
Exon Skipping
Gene
ENSMUSG00000000531 | Grasp
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:MGI Symbol;Acc:MGI:1860303]
Coordinates
chr15:101228832-101230627:+
Coord C1 exon
chr15:101228832-101228886
Coord A exon
chr15:101228991-101229093
Coord C2 exon
chr15:101230534-101230627
Length
103 bp
Sequences
Splice sites
3' ss Seq
GTTCGGTCTCTTGTTTACAGACA
3' ss Score
7.9
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAAGGTTCTAACTTTGGAGAAAGGGGACAACCAGACCTTTGGCTTCGAGATCCAG
Seq A exon
ACATATGGCCTTCACCACCGAGAGGAGCAGCGTGTAGAGATGGTGACCTTCGTCTGCCGAGTTCATGAATCCAGCCCTGCCCAGCTGGCTGGGCTCACGCCAG
Seq C2 exon
GGGACACTATTGCCAGCGTCAACGGTCTCAACGTGGAAGGCATCCGGCACCGGGAGATTGTCGATATCATCAAGGCGTCTGGCAACGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000531-'4-11,'4-4,10-11=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.086 C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(18.4=84.2)
A:
PF0059519=PDZ=FE(39.1=100)
C2:
PF0059519=PDZ=FE(35.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCTAACTTTGGAGAAAGGGG
R:
CTGAGAACGTTGCCAGACGC
Band lengths:
147-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types