DreEX6035428 @ danRer10
Exon Skipping
Gene
ENSDARG00000074143 | myo10l3
Description
myosin X-like 3 [Source:ZFIN;Acc:ZDB-GENE-070912-237]
Coordinates
chr9:12764794-12772254:-
Coord C1 exon
chr9:12772154-12772254
Coord A exon
chr9:12767548-12767614
Coord C2 exon
chr9:12764794-12764886
Length
67 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGTGTCTCCGTTCAGGGA
3' ss Score
10.52
5' ss Seq
AAGGTGGAC
5' ss Score
2.93
Exon sequences
Seq C1 exon
GTGAACCGGTTCGAGCAGTTCAACATTAACTACGCCAACGAGAAGCTCCAGGAGTACTTCAACAAGCACATCTTCTCCCTGGAGCAGCTTGAATATAACAG
Seq A exon
GGAGGGAATCCACTGGGAAGCCATCGACTGGATGGACAACGCAGAGTGTTTGGATCTCATCGAAAAG
Seq C2 exon
AAACTGGGCATGTTGGCTCTTATCAATGAAGAGAGTCGATTCCCTAAAGGCACGGACTACACCCTGCTGGAGAAGCTCCACAGCCGGCATGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074143-'12-16,'12-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.0=100)
A:
PF0006316=Myosin_head=FE(3.3=100)
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCGGTTCGAGCAGTTCAA
R:
TTCTCCAGCAGGGTGTAGTCC
Band lengths:
173-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]