DreEX6037015 @ danRer10
Exon Skipping
Gene
ENSDARG00000078451 | si:ch211-165b19.4
Description
si:ch211-165b19.4 [Source:ZFIN;Acc:ZDB-GENE-070912-132]
Coordinates
chr9:32844620-32845344:-
Coord C1 exon
chr9:32845200-32845344
Coord A exon
chr9:32844957-32845119
Coord C2 exon
chr9:32844620-32844880
Length
163 bp
Sequences
Splice sites
3' ss Seq
AGTTTATTATTTGTATACAGCAA
3' ss Score
4.39
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTGGGATGGATAGTGGTATTATTGGAGGGAAAGTTGCTAAACCTCATTCAAGACCATACATGGCATTCATACAGAACAAATTTGAGGCATGTGGAGGGATGCTGATCAGAGACGATTACATTCTGACAGCGGCTCACTGTTTGAA
Seq A exon
CAACAATGATCGGAGTCACTTTGAGGTTGTACTTGGAGCCCACAACATCAGCAAACATGAGAAAAGCCAGCAGAGGATTCAAGTAAAAAAACATATCCAGCATCCTATGTTTCTAAACAGCAACAATGAAAAGGACTACAGCTATGATATCATGTTGCTAAAG
Seq C2 exon
TTGAAGAACAAAGCTAAGATCAACAAATTTGTTAAAGTTTTGTCTCTTCCTAAAAAAAATGAGAAACTTCCAGAAAATGTCAAATGCTCAATAGCTGGCTGGGGGACGAAAGAATCAAATGGAAATAAGCCATCAGATGTACTGGAGGAAGTCACTGTCAAACTGCAGAACAACCATGAATGTGAAAGAAAATGGCAGCAACATTTTAACCCTGAAAGAATGTTCTGTAGTGTCTCAGATGGGAAACATGCTTTTTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078451-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.127 C2=0.080
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.5=85.7)
A:
PF0008921=Trypsin=FE(23.8=100)
C2:
PF0008921=Trypsin=FE(37.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTCTGACAGCGGCTCAC
R:
CAGGGTTAAAATGTTGCTGCCA
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]