BtaEX0001179 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKY6]
Coordinates
chr21:35230256-35231470:-
Coord C1 exon
chr21:35231323-35231470
Coord A exon
chr21:35230701-35230848
Coord C2 exon
chr21:35230256-35230513
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGACTCCCTTTCCCTCTCAGCTC
3' ss Score
9.74
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
GGAGAATCATCGGGGGCCACAAGGCCAAGCCACACTCCCGTCCCTACATGGCGTTTCTTCAGTTCAAGATTTCAGGGGAACCTCAAAGATGTGGGGGATTCCTTGTGCGTGAGGACTTCGTGCTGACAGCAGCTCACTGCCTGGGAAG
Seq A exon
CTCTCTGAGCACCTCAATCAACGTCACCCTGGGGGCCCACAACATCAAAGAACGAGAGATGACCCAGCAGGTCATCCCAGTGAGAAGACCCATTCCCCACCCAGACTATAATGATGAGACTTGGGCCAACGACATCATGTTACTGAAG
Seq C2 exon
CTGATGAGGAAGGCACATGTGACCACCACTGTGAGCCCCATCAGTCTGCCCAGGGACTGGGATACGGTGAATCCAGGGATGATGTGCAGTGTGGCCGGTTGGGGGCGACGGGGGGTAAATATGCCCTCTACAGACAAACTACAGGAGGTAGATCTTGAAGTCCGAAGTGAGGAGGAATGTAAGGATCGCTTCCAAGACTACAATGCCTCCATACAGATATGTGCTGGAGATCCAAGCAAGAGGAAGAATTCTTTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038080_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.160 C2=0.198
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.1=94.0)
A:
PF0008921=Trypsin=FE(22.0=100)
C2:
PF0008921=Trypsin=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGACTTCGTGCTGACAG
R:
AGGCATTGTAGTCTTGGAAGCG
Band lengths:
248-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development