DreEX6037403 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36852170-36860073:+
Coord C1 exon
chr9:36852170-36852295
Coord A exon
chr9:36852459-36852623
Coord C2 exon
chr9:36859912-36860073
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATTATTTCAAAATGATAAAGGTG
3' ss Score
1.91
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TGGCCAACCCCTGTCTACGGATGACCTGTGAATTTATGTGCTTGCTCAATCCAACCGGGGCCAGCTGCACTTGTCCAGAGGGGAAGACCTTGGTCAATGGCTCTTGTATTGACCCCATTGTCTCAG
Seq A exon
GTGAGCTGTGCCGACCTGCCTGTGAGAATGGAGGACGCTGCATGGCCAACGAAAAAGGAGACTGGCGCTGTTACTGCTGGCCCAATTTCTCTGGGGAACGCTGTGAAGTCAACCATTGTGCAGATTACTGCTTAAACGGAGGCACGTGCACTGGCTCACCTCTTG
Seq C2 exon
GGAAACCTACTTGCCGCTGTGTGACAGGCTTCACCGGCCCGAACTGTGAGAGGAGGATCTGTGATAATCACTGTCTGAACGGAGGCACATGTGACGTAAGCTCTGGAAACCAGCCAGTGTGCCGCTGCTTGGCAGAGTATACCGGCGACCGCTGTCTTTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'83-86,'83-85,84-86=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCCCTGTCTACGGATGA
R:
GCACACTGGCTGGTTTCCA
Band lengths:
245-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]