HsaEX6015786 @ hg38
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
LDL receptor related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:140297808-140322088:-
Coord C1 exon
chr2:140321963-140322088
Coord A exon
chr2:140314935-140315099
Coord C2 exon
chr2:140297808-140297969
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACATTTCTTCTCATAAACAGATG
3' ss Score
8.52
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
TACCCAATCCATGCTTGGATTTAGCATGCGAATTTCTTTGCTTGCTAAATCCTTCTGGGGCCACTTGTGTGTGTCCAGAAGGAAAATATTTGATTAATGGCACCTGCAATGATGACAGCCTGTTAG
Seq A exon
ATGATTCATGTAAGTTAACTTGTGAAAATGGAGGAAGATGCATTTTAAATGAGAAAGGTGATTTGAGGTGTCACTGTTGGCCCAGTTATTCAGGAGAAAGATGTGAAGTCAACCACTGTAGCAACTACTGCCAGAATGGAGGAACTTGCGTACCATCAGTTCTAG
Seq C2 exon
GGAGACCCACCTGCAGCTGTGCACTGGGTTTCACTGGGCCAAACTGTGGTAAGACAGTCTGTGAGGATTTTTGTCAAAATGGAGGAACCTGCATTGTGACTGCTGGAAACCAGCCTTACTGCCACTGCCAGCCGGAATACACCGGAGACAGATGTCAGTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-'119-156,'119-153,121-156=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=PU(58.3=37.5)
C2:
PF0000822=EGF=PD(38.9=25.5),PF0000822=EGF=WD(100=60.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAATCCTTCTGGGGCCAC
R:
ACTGACATCTGTCTCCGGTGT
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains