GgaEX0018738 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33490730-33504913:-
Coord C1 exon
chr7:33504788-33504913
Coord A exon
chr7:33499170-33499334
Coord C2 exon
chr7:33490730-33490891
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTGCTTTTGCTGCAGATG
3' ss Score
11.3
5' ss Seq
TTGGTACAT
5' ss Score
1.81
Exon sequences
Seq C1 exon
TGCCTAATCCATGCTTGGACCTGACATGTGAATTCATTTGTTTACTCAACCCTTCTGGTGCATCATGTGCTTGTCCAGAAGGAAAATCATTAGTTAATGGGACATGCGTAGATCAAAGTCTCTTAG
Seq A exon
ATGATACATGCAAACTAACCTGTGAAAATGGAGGAAAGTGCATTATAAATGAGAAGGGAGATCCACGATGTCACTGCTGGCCAAGTTACTCAGGTGAAAGGTGTGAAACCAACCACTGCTACAACTACTGCCAGAATGGAGGAACCTGTGGAGCCTCTCTCCTTG
Seq C2 exon
GGAGGCCCACCTGCAATTGTGCGCTGGGTTTTACAGGACCAAACTGCAATCAGACAGTCTGCCATCGTTTTTGCCAAAATGGAGGAACCTGCAGTGTCACTGCTGGAAATCAGCCCTTTTGCAGCTGCTTGCCTGAGTATACAGGAGACAGATGTCAGTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'110-120,'110-118,111-120
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCTTGGACCTGACATGT
R:
GCTGCAAAAGGGCTGATTTCC
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]