HsaEX6015786 @ hg19
Exon Skipping
Gene
ENSG00000168702 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:6693]
Coordinates
chr2:141055377-141079657:-
Coord C1 exon
chr2:141079532-141079657
Coord A exon
chr2:141072504-141072668
Coord C2 exon
chr2:141055377-141055538
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACATTTCTTCTCATAAACAGATG
3' ss Score
8.52
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
TACCCAATCCATGCTTGGATTTAGCATGCGAATTTCTTTGCTTGCTAAATCCTTCTGGGGCCACTTGTGTGTGTCCAGAAGGAAAATATTTGATTAATGGCACCTGCAATGATGACAGCCTGTTAG
Seq A exon
ATGATTCATGTAAGTTAACTTGTGAAAATGGAGGAAGATGCATTTTAAATGAGAAAGGTGATTTGAGGTGTCACTGTTGGCCCAGTTATTCAGGAGAAAGATGTGAAGTCAACCACTGTAGCAACTACTGCCAGAATGGAGGAACTTGCGTACCATCAGTTCTAG
Seq C2 exon
GGAGACCCACCTGCAGCTGTGCACTGGGTTTCACTGGGCCAAACTGTGGTAAGACAGTCTGTGAGGATTTTTGTCAAAATGGAGGAACCTGCATTGTGACTGCTGGAAACCAGCCTTACTGCCACTGCCAGCCGGAATACACCGGAGACAGATGTCAGTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168702-'83-84,'83-83,84-84=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=63.6),PF0000822=EGF=PU(55.6=36.4)
C2:
PF0000822=EGF=PD(38.9=25.5),PF0000822=EGF=WD(100=60.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAAATCCTTCTGGGGCCAC
R:
ACTGACATCTGTCTCCGGTGT
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)