DreEX6037435 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36729507-36730334:+
Coord C1 exon
chr9:36729507-36729633
Coord A exon
chr9:36729752-36729903
Coord C2 exon
chr9:36730210-36730334
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATTTTCAAATTGCTTTCTAGGAA
3' ss Score
9.52
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTATTTATTCTGGACCGAGTGGGGTAAAAACCCTTGCATAGGCCGCGCTCGATTAGACGGATCAGACCAAGTGACTCTGGTCAGCTCTGGCATCGCCTGGCCGAATGGAATCACCATTGACTATGAG
Seq A exon
GAAAATAGATTATACTGGTGCGACGCCCGGACCGACAAGATAGAAAGGATCAACCTTGAAACCGGGGAGGGCCGAGAGATTGTACTGTCAGCCGCCAATGTGGACCTGTTCTCTGTGGCTGTGTTCGGGGCTTACATCTACTGGTCTGACAG
Seq C2 exon
AGCTCATGCCAATGGATCAATCCGCCGTGGATTCAAGAGCGATGCCACCGATGCTGTCACCATGAGAAGCGGCCTTGGCGTCAACCTGAAGGATGTGAAAGTGTTTAACAAAGGCCGGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'36-38,'36-37,37-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=97.7)
A:
PF0005812=Ldl_recept_b=WD(100=78.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGACCGAGTGGGGTAAA
R:
TCTCCCGGCCTTTGTTAAACAC
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]